PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG355400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 411aa    MW: 43744.1 Da    PI: 8.744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG355400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-06320345630
                          HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                          +++Er RR +i +++ +L+el+P+ +
  Pavir.6KG355400.1.p 320 SIAERVRRTKISERIRKLQELVPNmD 345
                          689********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-6317346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.02E-4318348No hitNo description
Gene3DG3DSA:4.10.280.101.8E-5319346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMTS SGLQRYRSAP STLLGEVCED FLQPGPRAGS PDPGADNVFS  60
RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQHQNQQQ QQQQQQQMMF HSQQQQMATV  120
ESGLYRTVSS GMEAPTAAVA GASSLIRQSS SPAGFLNHLN MDNGYGGMLR AGGMGVGFRN  180
GAASAAAAAD SPSGGGGGGR LKGQLSFSSR QGSLMSQISE MGSEELGGSS PEGAGGGRGY  240
IPGYPMSSGW EDSSSLMSES LSGMKRPRDS SEPGQSGLTQ QFSLPKTSSE MAAIEKFLQF  300
QDAVPCKIRA KRGCATHPRS IAERVRRTKI SERIRKLQEL VPNMDKETLG DRSVSVWFTN  360
PPCQLPCEES RTTPPELTGV LPIPCSKPTP QTCWIWPSTT SRISRSRSRC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973867.11e-180PREDICTED: transcription factor bHLH130-like
TrEMBLK3YI811e-180K3YI81_SETIT; Uncharacterized protein
STRINGSi013950m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-32bHLH family protein