PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6KG355400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 411aa MW: 43744.1 Da PI: 8.744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG355400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.6	3.4e-06	320	345	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L+el+P+ + Pavir.6KG355400.1.p 320 SIAERVRRTKISERIRKLQELVPNmD 345 689********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.95E-6	317	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.02E-4	318	348	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-5	319	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYGSPVSKDL NLPVQPPMTS SGLQRYRSAP STLLGEVCED FLQPGPRAGS PDPGADNVFS 60 RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQHQNQQQ QQQQQQQMMF HSQQQQMATV 120 ESGLYRTVSS GMEAPTAAVA GASSLIRQSS SPAGFLNHLN MDNGYGGMLR AGGMGVGFRN 180 GAASAAAAAD SPSGGGGGGR LKGQLSFSSR QGSLMSQISE MGSEELGGSS PEGAGGGRGY 240 IPGYPMSSGW EDSSSLMSES LSGMKRPRDS SEPGQSGLTQ QFSLPKTSSE MAAIEKFLQF 300 QDAVPCKIRA KRGCATHPRS IAERVRRTKI SERIRKLQEL VPNMDKETLG DRSVSVWFTN 360 PPCQLPCEES RTTPPELTGV LPIPCSKPTP QTCWIWPSTT SRISRSRSRC *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYGSPVSKDL NLPVQPPMTS SGLQRYRSAP STLLGEVCED FLQPGPRAGS PDPGADNVFS  60
RFLADHQIRD KPPAPAPHAP AAAHFPDTAA MASQHQNQQQ QQQQQQQMMF HSQQQQMATV  120
ESGLYRTVSS GMEAPTAAVA GASSLIRQSS SPAGFLNHLN MDNGYGGMLR AGGMGVGFRN  180
GAASAAAAAD SPSGGGGGGR LKGQLSFSSR QGSLMSQISE MGSEELGGSS PEGAGGGRGY  240
IPGYPMSSGW EDSSSLMSES LSGMKRPRDS SEPGQSGLTQ QFSLPKTSSE MAAIEKFLQF  300
QDAVPCKIRA KRGCATHPRS IAERVRRTKI SERIRKLQEL VPNMDKETLG DRSVSVWFTN  360
PPCQLPCEES RTTPPELTGV LPIPCSKPTP QTCWIWPSTT SRISRSRSRC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973867.1	1e-180	PREDICTED: transcription factor bHLH130-like
TrEMBL	K3YI81	1e-180	K3YI81_SETIT; Uncharacterized protein
STRING	Si013950m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG355400.1.p